PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06323.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 195aa    MW: 20611.9 Da    PI: 8.0168
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06323.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof113.31.1e-352683461
                   zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                             + l+cprC+s  tkfCyynny+l qPryfCk+CrryWt+GG+lr+vPvGgg+r++ ++
  Rsa1.0_06323.1_g00001.1 26 EPLPCPRCNSVITKFCYYNNYNLLQPRYFCKSCRRYWTQGGTLRDVPVGGGTRRSSSK 83
                             6789*************************************************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-232677IPR003851Zinc finger, Dof-type
PfamPF027011.0E-312782IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.9412882IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103066IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MPSESKPARV QGSTSTAAYP PPNMAEPLPC PRCNSVITKF CYYNNYNLLQ PRYFCKSCRR  60
YWTQGGTLRD VPVGGGTRRS SSKRNRSFSS SSCSASLITM SQGTVTTEAK GSTVNSGHGS  120
FASLLNEQSD GAAFLALGSG SDGLDYEFGC RYGYGLEDMS IGYLGGGFGG EIPVVNGGDT  180
WQIGEIGGKS GDSLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013673122.12e-90PREDICTED: dof zinc finger protein DOF1.6
SwissprotQ9SX972e-63DOF16_ARATH; Dof zinc finger protein DOF1.6
TrEMBLA0A078FVB97e-96A0A078FVB9_BRANA; BnaA08g03730D protein
STRINGBra015609.1-P4e-84(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47655.11e-58Dof family protein